Bioconductor No replicates

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892

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methylsig no replicates dmr

6.7 years ago nilaycan • 0

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3.6k

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deseq2 without replicate no replicates

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by Tony • 0

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12k

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deseq2 no replicates high p-adj values

updated 2.7 years ago by Michael Love 43k • written 7.5 years ago by Mahtetie • 0

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2.3k

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rnaseq edger DGE no replicates

7.6 years ago Stefany Solano • 0

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1.5k

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diffhic estimate dispersion value glm no replicates deseq

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by hwick1 ▴ 20

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5.2k

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ATAC differential binding analysis no replicates DEseq2 chromatin

8.0 years ago BioinfGuru ▴ 70

6 results • Page 1 of 1

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Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k

The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…

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Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

Comment: ComBat with repeated measures

Answer: Package developing and interoperation with Bioconductor

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

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